This project is mirrored from https://*****@github.com/JuliaMolSim/DFTK.jl.git.
Pull mirroring updated .
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v0.5.13 Release: v0.5.13
[Diff since v0.5.12](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.12...v0.5.13) **Closed issues:** - Unsure about role of `l_local` in UPF (#765) - Error with irrfbz_path (#767) **Merged pull requests:** - Splitting computations of δψ and δocc (#758) (@epolack) - Require Interpolations 1.14 (#768) (@antoine-levitt) - Update Brillouin to 0.5.10 (#769) (@antoine-levitt) - More systematic use of named tuples (#770) (@epolack) - update comments and dH->dV (#771) (@gkemlin) - Computing density with occupation threshold (#772) (@epolack) - Drop compatibility for older versions (#773) (@mfherbst)
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v0.5.12 Release: v0.5.12
[Diff since v0.5.11](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.11...v0.5.12) **Closed issues:** - Test on forces derivatives is failing unexpectedly (#742) - Broken link (#763) **Merged pull requests:** - Cell to supercell routines (#627) (@LaurentVidal95) - Shifting functions for `k`-points (#714) (@epolack) - Support for NC pseudos in UPF format (#741) (@azadoks) - Custom CG (#750) (@gkemlin) - Optimize symmetry checking (#751) (@antoine-levitt) - Added reference for the energy cutoff smearing (#754) (@LaurentVidal95) - update forces publication (#755) (@gkemlin) - CG callback (#757) (@gkemlin) - Integrate pseudopotential documentation (#764) (@mfherbst)
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v0.5.11 Release: v0.5.11
[Diff since v0.5.10](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.10...v0.5.11) **Merged pull requests:** - Allowing for fixed Fermi level (#727) (@epolack) - DFPT paper (#747) (@gkemlin) - Switch chat spaces to zulip (#748) (@mfherbst)
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v0.5.10 Release: v0.5.10
[Diff since v0.5.9](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.9...v0.5.10) **Closed issues:** - Use real FFTs (#36) - Derivative in Fourier space of real function not real (#694) - Reduce computation time for energy calculation (#703) **Merged pull requests:** - Band structure for non-standard lattice, cleanup (#555) (@jaemolihm) - Bump compat for MPI to 0.20 (#743) (@github-actions[bot]) - Fix forces with symmetries (#744) (@antoine-levitt) - Update citations (#745) (@mfherbst)
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v0.5.9 Release: v0.5.9
[Diff since v0.5.8](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.8...v0.5.9) **Closed issues:** - Dynamically adjust number of targeted bands in SCF (#562) - Get rid of n_ep_extra (#652) - Failling CI (#730) **Merged pull requests:** - Automatically adapt number of bands during SCF (#695) (@mfherbst) - Make LOBPCG GPU-compatible (#711) (@GVigne) - Fix computation of Fermi level at zero temperature (#728) (@gkemlin) - Misc fixes for the examples (#731) (@epolack) - Restrict upper version bound to Brillouin.jl (#734) (@mfherbst) - Small bugfixes and changes (#736) (@mfherbst) - Make CUDA an optional dependency (#738) (@mfherbst) - Test for consistency of psp correction (#739) (@mfherbst) - Save some matrix-vector products in Sternheimer solver (#740) (@gkemlin)
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v0.5.8 Release: v0.5.8
[Diff since v0.5.7](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.7...v0.5.8) **Closed issues:** - G_to_r/r_to_G -> ifft/fft? (#715) - Type question (#724) **Merged pull requests:** - Add blowup functions to Kinetic term for cutoff smearing (#696) (@LaurentVidal95) - ForwardDiff: Return dual energies in scfres (#709) (@niklasschmitz) - Add a few NaN checks in LOBPCG (#710) (@GVigne) - Remove advertisement for summer school (#716) (@mfherbst) - Derivative of complex erfc (#720) (@epolack) - Changing naming convention for FFT (#721) (@epolack) - Introduce `irfft` for inverse FFT of real-valued quantities (#722) (@epolack) - Adding ElementGaussian (#723) (@epolack) - Fix definition of erfc (#725) (@epolack) - Add brackets around where clauses (#726) (@epolack)
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v0.5.7 Release: v0.5.7
[Diff since v0.5.6](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.6...v0.5.7) **Merged pull requests:** - Add documentation about conducting a convergence study (#701) (@killah-t-cell) - Fix some image links in documentation (#713) (@mfherbst)
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v0.5.6 Release: v0.5.6
[Diff since v0.5.5](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.5...v0.5.6) **Closed issues:** - Overly excessive `n_bands` by default for spin-polarised calculations (#692) **Merged pull requests:** - DFTK Juliacon demo code (#677) (@mtowara) - Overhaul docs organisation (#684) (@antoine-levitt) - Reduce default number of bands for spin-polarised (#693) (@mfherbst) - Fix dual handling for parametrised functionals (#699) (@mfherbst) - Typo in dos.jl (#702) (@gkemlin) - Zygote scf merge (#705) (@mtowara) - Update to next spglib (#707) (@mfherbst)
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v0.5.5 Release: v0.5.5
[Diff since v0.5.4](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.4...v0.5.5) **Merged pull requests:** - Integrate with DftFunctionals.jl (#633) (@mfherbst) - Cap tolerance in check on electron count (#682) (@mfherbst) - Graphene band structure (#683) (@antoine-levitt) - CompatHelper: bump compat for Interpolations to 0.14, (keep existing compat) (#685) (@github-actions[bot]) - Fixup stylistic aspects raised in #633 (#686) (@mfherbst) - Fix bug on magnetization in guess_density (#687) (@gkemlin) - Band energy derivatives using ForwardDiff (#688) (@mfherbst) - Add code for paper by Cazalis on 2D-confined graphene (#689) (@antoine-levitt)
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v0.5.4 Release: v0.5.4
[Diff since v0.5.3](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.3...v0.5.4) **Closed issues:** - How to set up models (#666) - Stronger type annotations for model construction (#668) - Get rid of lowpass_for_symmetry! (#672) - Don't hardcode ylims in band structure (#674) - MPI error with redirect_stdout() (#681) **Merged pull requests:** - Handling complex numbers for PairwisePotential (#655) (@epolack) - Add more type annotations to model constructors (#670) (@mfherbst) - Performance optimizations (#671) (@antoine-levitt) - Handling of extra bands in response calculations (#679) (@gkemlin) - Store G_vectors and r_vectors in the basis (#680) (@antoine-levitt)
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v0.5.3 Release: v0.5.3
[Diff since v0.5.2](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.2...v0.5.3) **Closed issues:** - Rewrite ewald (#656) - DFTK doesn't precompile (#660) **Merged pull requests:** - Precompute Ewald summation bounds (#659) (@niklasschmitz) - Small changes to improve working with intervals (#661) (@mfherbst) - Testing RealSpaceMultiplication consistency as well (#662) (@epolack) - Refactor Pairwise term to precompute summation bounds (#663) (@niklasschmitz) - fix typo (#664) (@killah-t-cell) - Fix performance gotcha (#665) (@antoine-levitt) - Turn LOBPCG problem size warning to error (#667) (@antoine-levitt)
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v0.5.2 Release: v0.5.2
[Diff since v0.5.1](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.1...v0.5.2) **Closed issues:** - Fix forwarddiff with symmetries (#643) - Tolerance issue when using ForwardDiff (#651) **Merged pull requests:** - Forwarddiff for metals (#638) (@mfherbst) - Fix cart (#657) (@epolack) - Forward-diff support for pseudo parameters (#658) (@mfherbst)
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v0.5.1 Release: v0.5.1
[Diff since v0.5.0](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.5.0...v0.5.1) **Closed issues:** - Pretty traces (#123) - Define and use cis2pi (#400) - Direct minimization with Double64 does not work (#428) - Investigate forces test failure (#625) - Help Needed (#649) **Merged pull requests:** - Remove dead and unused code (#634) (@mfherbst) - Remove deprecation wrappers (#635) (@mfherbst) - Zygote scf (#636) (@mtowara) - Use chemical_formula function from AtomsBase (#639) (@mfherbst) - Simplify pwbasis constructors (#640) (@antoine-levitt) - Add and use cis2pi functions (#641) (@kvnoct) - Filter rgrid symmetries (#642) (@antoine-levitt) - Zygote scf (#644) (@mtowara) - Integrate with InteratomicPotentials.jl (#645) (@jrdegreeff) - CompatHelper: bump compat for Roots to 2, (keep existing compat) (#646) (@github-actions[bot]) - Test consistency of local potential in both real and Fourier space (#647) (@antoine-levitt) - Using Cartesian routine (#648) (@epolack) - update support for InteratomicPotentials v0.2 (#654) (@jrdegreeff)
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v0.5.0 Release: v0.5.0
[Diff since v0.4.7](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.7...v0.5.0) Note that this release increases the minor version and contains a number of breaking changes: - The `atoms` field in the `Model` data structure, which used to contain pairs mapping from an element to a list of associated positions, is now split up into a plain `atoms` vector (containing a flat and repeated list of all elements) and a `positions` vector (containing the list of respective positions). I.e. whereas before one would have, for example: ```julia Ga = ElementCoulomb(:Ga) As = ElementCoulomb(:As) atoms = [Ga => [[0.1, 0.2, 0.3], [0.4, 0.5, 0.6], ], As => [[0.7, 0.8, 0.9], ], ] ``` we now have ```julia Ga = ElementCoulomb(:Ga) As = ElementCoulomb(:As) atoms = [Ga, Ga, As] positions = [[0.1, 0.2, 0.3], [0.4, 0.5, 0.6], [0.7, 0.8, 0.9], ] ``` This change is carried forward to **all interfaces** of DFTK. This means that all `Model` constructors as well as the `model_atomic`, `model_DFT`, `model_LDA`, `model_PBE`, `model_SCAN` functions change interface. E.g. constructing an LDA model for this fictitious gallium arsenide system could now be done as such: ```julia Ga = ElementCoulomb(:Ga) As = ElementCoulomb(:As) atoms = [Ga, Ga, As] positions = [[0.1, 0.2, 0.3], [0.4, 0.5, 0.6], [0.7, 0.8, 0.9], ] lattice = 5.6 * I(3) model = model_LDA(lattice, atoms, positions) ``` All examples and tests have been updated and can be used to draw examples for the new interface. For convenience and to simplify amending downstream code the old `model_LDA` etc. function have not been completely removed for now, but only marked as deprecated. However, removal will occur at the next patch release. (#626) - The `compute_forces` and `compute_forces_cart` functions now also return arrays of `Vec3` (Static vector of 3 dimensions). These vectors are the forces on a particular atom in the same order as the `model.positions` and `model.atoms` arrays. (#626) - The `Model(lattice; atoms, positions, kwargs...)` constructor has been dropped in favour of `Model(lattice, atoms, positions; kwargs...)`, i.e. `atoms` and `positions` are now positional arguments. This was done to make the constructor resemble more the structure of the `model_LDA`, `model_PBE`, etc. functions. (#629). - The default LDA model constructed by `model_LDA` is now `[:lda_x, :lda_c_pw]` instead of `[:lda_xc_teter93]`. To return to the old behaviour replace `model_LDA(lattice, atoms, positions; kwargs...)` by `model_DFT(lattice, atoms, positions, :lda_xc_teter93; kwargs...)`. (#629) - The default `kshift` in the `PlaneWaveBasis` constructor is now always `(0, 0, 0)`. It used to be `1/2` in one direction in case the `kgrid` was even in this direction. Manually specifying the desired `kshift` returns the old behaviour. (#630) - The `load_psp(element; kwargs...)` function is discontinued and has been removed. Instead use a combination of `list_psp(element; kwargs...)` with `load_psp(identifier)` or the `attach_psp(system::AbstractSystem)` function. (#558) - The deprecated `compute_stresses(scfres)` function has now been removed in favour of `compute_stresses_cart(scfres)`. (#628) - The deprecated `PowerNonlinearity(C, α)` constructor has now been removed in favour of `LocalNonlinearity(ρ -> C * ρ^α)`. (#628) **Closed issues:** - Autodiff (#107) - Figure out notations for the symmetry operations (#266) - Possibility to "unfold" the k grid (#382) - Make another round of profiling (#425) - Improve density computation (#456) - Employing DFTK results for Machine-Learning (#595) - Refactor SymOp to be primarily (W,w) rather than (S,tau) (#618) - Remove ksymops (#621) **Merged pull requests:** - Integrate with AtomsBase (#558) (@mfherbst) - Adding framework for pairwise interactions (#602) (@epolack) - Random optimization (#610) (@antoine-levitt) - Fix performance issue in block array (#611) (@antoine-levitt) - Small cleanup in LOBPCG (#612) (@mfherbst) - Remove coordinate_cart field from Kpoint (#613) (@niklasschmitz) - Small optimizations (#615) (@antoine-levitt) - Refactoring diagonalize_all_kblocks (#617) (@antoine-levitt) - Symop refactoring (again!) (#619) (@antoine-levitt) - Fixes for julia 1.8 (#620) (@mfherbst) - Excise ksymops (#622) (@antoine-levitt) - Excise symops, part 2 (#624) (@antoine-levitt) - Refactor atoms field in Model (#626) (@mfherbst) - Remove deprecated features (#628) (@mfherbst) - Make atoms and positions positional arguments of the Model (#629) (@mfherbst) - Change default kshift to zero (#630) (@mfherbst) - Remove kpoint fallback (#631) (@mfherbst) - Remove final mention of ksymops (#632) (@mfherbst)
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v0.4.7 Release: v0.4.7
[Diff since v0.4.6](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.6...v0.4.7) **Closed issues:** - Segfault in preconditioning (#529) - Investigate eigensolver bad convergence (#578) - Convergence monitoring (#579) - De-`threadid`ing parallel loops (#588) **Merged pull requests:** - CompatHelper: bump compat for Polynomials to 3, (keep existing compat) (#598) (@github-actions[bot]) - Use Val(true) in G_to_r to help const-prop (#605) (@antoine-levitt) - Change printing (#606) (@antoine-levitt) - Switch maximum iteration count to 100 (#607) (@antoine-levitt) - Fix unsafe use of unpack (#608) (@antoine-levitt)
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v0.4.6 Release: v0.4.6
[Diff since v0.4.5](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.5...v0.4.6) **Closed issues:** - Use symmetrization for forces (#515) **Merged pull requests:** - Replace `@timing_seq` by thread-local timers (#574) (@mfherbst) - Optimization to density building (#575) (@antoine-levitt) - Cleanup Chi0Mixing docstrings and timings (#576) (@mfherbst) - Symop refactoring (#577) (@antoine-levitt) - Fix type in periodic problems guide (#580) (@epolack) - AtomicNonlocal Zygote compatibility (#581) (@mtowara) - Show function for kpoints (#582) (@antoine-levitt) - Proper integration of SCF with ForwardDiff (#583) (@mfherbst) - Schur complement in Sternheimer solver (#584) (@gkemlin) - Selection from zoo of PBE functionals (#586) (@mfherbst) - Use symmetrization in density construction (#589) (@antoine-levitt) - Remove a forwarddiff workaround (#590) (@antoine-levitt) - Fix threading (#592) (@antoine-levitt) - Fix formula to match comment (#594) (@epolack) - Symmetrize forces (#596) (@antoine-levitt) - Simplify the erfc cutoff in ewald (#597) (@antoine-levitt) - Support for multiple partials in ForwardDiff SCF (#599) (@niklasschmitz) - Using pseudo-inverse for one- and two-dimensional cells (#601) (@epolack) - Fix stress symmetrization (#603) (@antoine-levitt) - Add explicit error if SCF is used with no kinetic term (#604) (@epolack)
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v0.4.5 Release: v0.4.5
[Diff since v0.4.4](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.4...v0.4.5) **Closed issues:** - Make perturbation-based error bounds available in master (#560) **Merged pull requests:** - Merge the two functions for standardising cells (#568) (@mfherbst) - More XC fallback implementations (#569) (@mfherbst) - Recode lda_c_vwn (#570) (@antoine-levitt) - Implement meta-GGA functionals (#571) (@mfherbst) - Implement meta-GGAs depending on the laplacian of the density (#572) (@mfherbst) - Remove outdated and broken ABINIT interface (#573) (@mfherbst)
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v0.4.4 Release: v0.4.4
[Diff since v0.4.3](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.3...v0.4.4) **Closed issues:** - Error showing basis without kshift (#554) **Merged pull requests:** - Turn generators into arrays (#556) (@antoine-levitt) - Implement Marzari-Vanderbilt-DeVita-Payne (cold) smearing (#557) (@azadoks) - Fix typo (#559) (@haampie) - new example using AD to compute error bounds for forces (#561) (@gkemlin) - [WIP] Zygote SCF (#563) (@niklasschmitz) - Generalize PowerNonlinearity to LocalNonlinearity (#564) (@antoine-levitt) - Simplify xc fallbacks, allow second derivatives, remove codegen (#565) (@antoine-levitt) - Reformulate readme (#566) (@mfherbst)
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v0.4.3 Release: v0.4.3
[Diff since v0.4.2](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.2...v0.4.3) **Merged pull requests:** - Update to Wannier example and rename `atomic_symbol` (#550) (@mfherbst) - Refactor ene_ops and Terms interface (#551) (@mfherbst) - Remove model backreference from `Kpoint` structure (#552) (@mfherbst) - Include advertisement to DFTK school 2022 (#553) (@mfherbst)
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v0.4.2 Release: v0.4.2
[Diff since v0.4.1](https://github.com/JuliaMolSim/DFTK.jl/compare/v0.4.1...v0.4.2) **Closed issues:** - Magnetic fields in Package features. (#544) - Atomic positions in cartesian coordinates (#546) **Merged pull requests:** - First steps towards an interface to wannier90 (#518) (@LaurentVidal95) - Fixed minor issues in periodic_problems tutorial (#541) (@cw-tan) - Kinetic Energy Density function (#543) (@cw-tan) - Change magnetic field wording in docs (#545) (@mfherbst) - CompatHelper: bump compat for SpecialFunctions to 2, (keep existing compat) (#547) (@github-actions[bot]) - Docfix: Math rendering for guess_density (#548) (@niklasschmitz) - Add basic routine for wannier plotting (#549) (@mfherbst)